Mark DePristo f8a0a947e3 Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging ... -- New tribble library now uses 64 bit sizes. The 26K VCF has so much data that low-level tribble block indices where overflowing their int size values. This includes a to-be-committed tribble jar that fixes this problem -- See https://jira.broadinstitute.org/browse/GSA-652 -- Minor cleanup of error messages that were useful on the way to solving this monster problem		2012-11-02 09:09:59 -04:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
edu.mit.broad	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline.	2012-01-03 15:18:36 -05:00
org.broad	Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging	2012-11-02 09:09:59 -04:00