gatk3的最后一个经典版本3.8

Mark DePristo f8a0a947e3 Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging ... -- New tribble library now uses 64 bit sizes. The 26K VCF has so much data that low-level tribble block indices where overflowing their int size values. This includes a to-be-committed tribble jar that fixes this problem -- See https://jira.broadinstitute.org/browse/GSA-652 -- Minor cleanup of error messages that were useful on the way to solving this monster problem		2012-11-02 09:09:59 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Bugfix for GSA-647 HaplotypeCaller misses good variant because the active region doesn't trigger for an exome	2012-11-01 15:34:04 -04:00
public	Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging	2012-11-02 09:09:59 -04:00
settings	Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging	2012-11-02 09:09:59 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Add custom TestNGTestTransformer that adds a maximum test runtime of 10 minutes to all testng tests	2012-11-01 15:34:12 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00