Mark DePristo f876c51277 Separately track time spent doing user and system CPU work ... -- Allows us to ID (by proxy) time spent doing IO -- Refactor StateMonitoryingThreadFactory to use it's own enum, not Thread.State -- Reliable unit tests across mac and unix		2012-08-22 16:48:01 -04:00
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R	Fix for missing formatter in R 2.15	2012-08-17 11:49:02 -04:00
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java	Separately track time spent doing user and system CPU work	2012-08-22 16:48:01 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Complete GSA-497: Let Queue write out runInfo on the fly, after each job group finishes running	2012-08-21 14:44:18 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00