gatk3的最后一个经典版本3.8

Khalid Shakir f809f24afb Removed SelectHeader's --include_reference_name option since the reference is always included. ... In SelectHeaders instead of including the path to the file, only include the name of the reference since dbGaP does not like paths in headers.		2012-08-13 16:49:27 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Expanded the BQSR reporting script	2012-08-12 13:45:14 -04:00
public	Removed SelectHeader's --include_reference_name option since the reference is always included.	2012-08-13 16:49:27 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Update cofoja version in build.xml	2012-08-09 17:08:43 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00