Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI ... Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
test	Write a new tool for spliting reads that have N cigar string.	2014-01-01 22:21:36 -05:00