Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI ... Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
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R	Something changed with the ggtitle syntax in the latest version of ggplot2.	2013-08-14 14:40:03 -04:00
c	…
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
keys	…
packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
scala	Added HC trio calls and NA12878 KB snapshot to resource bundle.	2013-12-07 22:08:34 -05:00
testdata	Walker to create a fastq file from an interval list	2013-06-29 11:24:16 -04:00