Eric Banks f7c2c818fe Exact model memory optimization: instead of having a later matrix column pull in data from earlier ones (requiring us to keep them around until all dependencies are hit), the earlier columns push data into their dependents immediately and then are removed. This does trade off speed a little bit (because we need to call approximateLog10Sum each time we add to a dependent instead of once in an array at the end). Note that this commit would normally not get pushed into stable, but I'm about to make a very disruptive push into stable that would make merging this from unstable a nightmare.		2012-03-14 14:02:36 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Exact model memory optimization: instead of having a later matrix column pull in data from earlier ones (requiring us to keep them around until all dependencies are hit), the earlier columns push data into their dependents immediately and then are removed. This does trade off speed a little bit (because we need to call approximateLog10Sum each time we add to a dependent instead of once in an array at the end). Note that this commit would normally not get pushed into stable, but I'm about to make a very disruptive push into stable that would make merging this from unstable a nightmare.	2012-03-14 14:02:36 -04:00
test	CalibrateGenotypeLikelihoods now emits the position of the variant for debugging	2012-03-09 16:00:07 -05:00