gatk3的最后一个经典版本3.8

Eric Banks f7c2c818fe Exact model memory optimization: instead of having a later matrix column pull in data from earlier ones (requiring us to keep them around until all dependencies are hit), the earlier columns push data into their dependents immediately and then are removed. This does trade off speed a little bit (because we need to call approximateLog10Sum each time we add to a dependent instead of once in an array at the end). Note that this commit would normally not get pushed into stable, but I'm about to make a very disruptive push into stable that would make merging this from unstable a nightmare.		2012-03-14 14:02:36 -04:00
public	Exact model memory optimization: instead of having a later matrix column pull in data from earlier ones (requiring us to keep them around until all dependencies are hit), the earlier columns push data into their dependents immediately and then are removed. This does trade off speed a little bit (because we need to call approximateLog10Sum each time we add to a dependent instead of once in an array at the end). Note that this commit would normally not get pushed into stable, but I'm about to make a very disruptive push into stable that would make merging this from unstable a nightmare.	2012-03-14 14:02:36 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00