gatk3的最后一个经典版本3.8

aaron f7a877bfeb Changed Sting exception from a base exception to a runtime exception. This makes it so you can throw it without the consumer having to check it, and hopefully people will be more inclined to use it. ... Please use this instead of throwing a plain runtime exception. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@567 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-29 22:09:41 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
java	Changed Sting exception from a base exception to a runtime exception. This makes it so you can throw it without the consumer having to check it, and hopefully people will be more inclined to use it.	2009-04-29 22:09:41 +00:00
python	Better validation scripts and data	2009-04-29 17:40:07 +00:00
settings	Bumped sam-jdk version to fix bug unzipping bam files.	2009-04-28 20:02:05 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Better validation scripts and data	2009-04-29 17:40:07 +00:00
build.xml	You can now test a single JUnit test from the command line, by specifying the test with the command line parameter -Dsingle=myTestName.	2009-04-29 13:30:47 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00