Mark DePristo f7a126722b Cleaned up VariantContext accessors in RefMetaDataTracker ... It's no longer possible to provided allowed types, as this was a very rarely used feature in the engine. These get methods have been removed and local uses replaced with tests directly in their code. This simplified the RefMetaDataTracker significantly VariantContextRodBinding now forwards along all of the RefMetaDataTracker methods, so it is possible to create a full equivalent VariantContextRodBinding now as a walker field variable. All walkers updated to the new RefMetaDataTracker function call style		2011-07-28 00:16:34 -04:00
..
R	Moved gsalib sources from private/ to public/	2011-07-27 12:29:43 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Cleaned up VariantContext accessors in RefMetaDataTracker	2011-07-28 00:16:34 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable	2011-07-23 12:59:53 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00