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Joseph White 5be8bc5dfc Deprecate --mergeVariantsViaLD in HC 
New unit test for deprecated mergeVariantsViaLD
Update HaplotypeCallerIntegrationTest.java
Delete duplicate testHaplotypeCallerMergeVariantsViaLDException test.
 		2015-05-08 17:50:25 -04:00
..
main/java/org/broadinstitute/gatk Deprecate --mergeVariantsViaLD in HC 2015-05-08 17:50:25 -04:00
test/java/org/broadinstitute/gatk Deprecate --mergeVariantsViaLD in HC 2015-05-08 17:50:25 -04:00