gatk3的最后一个经典版本3.8

hanna f7363cf935 Support for loading from either a jar or a class directory. Fixes troubles with IntelliJ debugging. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@162 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-24 03:56:49 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Changed how the example walker gets run, I'm about to check in the GNU style command line args.	2009-03-22 20:10:17 +00:00
java/src/org/broadinstitute/sting	Support for loading from either a jar or a class directory. Fixes troubles with IntelliJ debugging.	2009-03-24 03:56:49 +00:00
python	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
settings	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
ivy.xml	Switched our code over to the new command line style (gnu style args), added the initial logger code, and added apache commons CLI to the IVY script.	2009-03-22 21:06:22 +00:00