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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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Mark DePristo f714ecc0ae Cleanup and improvements to NA12878 KB consensus creation 
-- Extract consensus creation routines into ConsensusMaker, and added unit tests
-- Consensus algorithm now only takes the last added call for any call set in the consensus.  So if you re-review a site that consensus result is always your most recent view
-- If you have a TP and a FP, now the site is considered DISCORDANT, not a FP.  This is better.
-- Move consensus GT tests into ConsensusMakerUnitTest
-- NA12878 KB updates consensus, removing old entries when present.  The previous version of the KB update function would add duplicates when reviewing, so when you reviewed a site, there would actually be two consensus records, the previous one and the new one including your review.  The new algorithm removes old entries before adding the new consensus, so that the consensus track always reflects the most recent results
-- Don't include duplicate call set names in the consensus supporting call set name
 		2013-02-21 12:01:38 -05:00
licensing Removing the symlink from the private license file 2013-02-09 12:57:44 -05:00
protected/java Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample). 2013-02-21 10:14:11 -05:00
public Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample). 2013-02-21 10:14:11 -05:00
settings Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample). 2013-02-21 10:14:11 -05:00
.gitignore Fixing the licensing scripts 2013-01-26 13:42:49 -05:00
build.xml Minor build.xml cleanup post-variant-migration 2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Replace org.broadinstitute.variant with jar built from the Picard repo 2013-02-05 17:24:25 -05:00