Mark DePristo f6d5499582 The GATK engine now ensures that incoming GATKSAMRecords have GATKSAMReadGroupRecord objects in their header ... -- Update SAMDataSource so that the merged header contains GATKSAMReadGroupRecord -- Now getting the NGSPlatform for a GATKSAMRecord is actually efficient, instead of computing the NGS platform over and over from the PL string -- Updated a few places in the code where the input argument is actually a GATKSAMRecord, not a SAMRecord for type safety		2012-12-24 13:35:09 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	The GATK engine now ensures that incoming GATKSAMRecords have GATKSAMReadGroupRecord objects in their header	2012-12-24 13:35:09 -05:00
test	Added functionality of outputting sorted GATKReport Tables	2012-12-20 14:02:21 -05:00