gatk3的最后一个经典版本3.8

Mark DePristo f6d5499582 The GATK engine now ensures that incoming GATKSAMRecords have GATKSAMReadGroupRecord objects in their header ... -- Update SAMDataSource so that the merged header contains GATKSAMReadGroupRecord -- Now getting the NGSPlatform for a GATKSAMRecord is actually efficient, instead of computing the NGS platform over and over from the PL string -- Updated a few places in the code where the input argument is actually a GATKSAMRecord, not a SAMRecord for type safety		2012-12-24 13:35:09 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2012-12-20 14:58:04 -05:00
public	The GATK engine now ensures that incoming GATKSAMRecords have GATKSAMReadGroupRecord objects in their header	2012-12-24 13:35:09 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00