202 lines
9.6 KiB
XML
202 lines
9.6 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<!--
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Run during package testing by the maven invoker plugin in the gatk-aggregator /pom.xml
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-->
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<parent>
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<groupId>org.broadinstitute.gatk</groupId>
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<artifactId>gatk-root</artifactId>
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<version>3.4-SNAPSHOT</version>
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<relativePath>../gatk-root</relativePath>
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</parent>
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<artifactId>gatk-package-tests</artifactId>
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<packaging>pom</packaging>
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<name>GATK Package Tests</name>
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<properties>
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<gatk.basedir>${project.basedir}/../..</gatk.basedir>
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<gatk.packageunittests.skipped>true</gatk.packageunittests.skipped>
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<gatk.packageintegrationtests.skipped>true</gatk.packageintegrationtests.skipped>
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<gatk.packagequeuetests.skipped>true</gatk.packagequeuetests.skipped>
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<gatk.packagelargescaletests.skipped>true</gatk.packagelargescaletests.skipped>
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<gatk.packageknowledgebasetests.skipped>true</gatk.packageknowledgebasetests.skipped>
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</properties>
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<!-- Dependency configuration (versions, etc.) -->
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<dependencies>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>${gatk.packagetests.artifactId}</artifactId>
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<version>${project.version}</version>
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</dependency>
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<!--
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gatk-utils test-jar added for BaseTest
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TODO: Currently the <exclusion> isn't working 100%, so switched to using additionalClasspathElements
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TODO: Uncomment below to use the explicitly bad "exclude *" to really test correct packaging,
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TODO: until we can separate BaseTest and other utilities into their own gatk-test-utils artifact.
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TODO: We only want the classes in the packaged jars tested, not the classes within the dependency jars too.
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See also:
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http://stackoverflow.com/questions/547805/how-to-exclude-all-transitive-dependencies-of-a-maven-dependency
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http://maven.apache.org/plugins/maven-jar-plugin/usage.html#The_preferred_way
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>gatk-utils</artifactId>
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<version>${project.version}</version>
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<type>test-jar</type>
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<scope>test</scope>
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<exclusions>
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<exclusion>
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<groupId>*</groupId>
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<artifactId>*</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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-->
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<!--
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NOTE: Any test dependencies used by a packaged artifact must be ALSO added here.
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For example, gatk-tools-protected uses caliper, so caliper should also be added here.
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TestNG and its reporters are inherited from the global gatk-root/pom.xml as dependencies.
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-->
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<dependency>
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<groupId>com.google.caliper</groupId>
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<artifactId>caliper</artifactId>
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<scope>test</scope>
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</dependency>
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</dependencies>
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<build>
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<directory>${gatk.packagetests.basedir}/target</directory>
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</build>
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<profiles>
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<profile>
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<id>unittests</id>
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<activation>
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<activeByDefault>false</activeByDefault>
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<property>
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<name>unittests.profile.enabled</name>
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<value>true</value>
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</property>
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</activation>
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<build>
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<!-- Plugin configuration -->
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-surefire-plugin</artifactId>
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<configuration>
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<basedir>${gatk.packagetests.basedir}</basedir>
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<workingDirectory>${gatk.packagetests.basedir}</workingDirectory>
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<classesDirectory>${project.build.outputDirectory}/ignored_by_package_test</classesDirectory>
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<testClassesDirectory>${gatk.packagetests.testClasses}</testClassesDirectory>
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<!-- TODO: Using additionalClasspathElement while debugging exclusion issue above -->
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<additionalClasspathElements>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-utils/target/gatk-utils-${project.version}-tests.jar</additionalClasspathElement>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-engine/target/gatk-engine-${project.version}-tests.jar</additionalClasspathElement>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-queue/target/gatk-queue-${project.version}-tests.jar</additionalClasspathElement>
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</additionalClasspathElements>
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</configuration>
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<executions>
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<execution>
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<id>unit-tests</id>
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<goals>
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<goal>test</goal>
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</goals>
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<configuration>
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<skip>${gatk.packageunittests.skipped}</skip>
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</configuration>
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</execution>
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</executions>
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</plugin>
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</plugins>
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</build>
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</profile>
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<profile>
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<id>integrationtests</id>
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<activation>
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<activeByDefault>false</activeByDefault>
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<property>
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<name>integrationtests.profile.enabled</name>
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<value>true</value>
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</property>
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</activation>
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<build>
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<!-- Plugin configuration -->
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-failsafe-plugin</artifactId>
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<configuration>
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<basedir>${gatk.packagetests.basedir}</basedir>
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<workingDirectory>${gatk.packagetests.basedir}</workingDirectory>
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<classesDirectory>${project.build.outputDirectory}/ignored_by_package_test</classesDirectory>
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<testClassesDirectory>${gatk.packagetests.testClasses}</testClassesDirectory>
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<!-- TODO: Using additionalClasspathElement while debugging exclusion issue above -->
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<additionalClasspathElements>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-utils/target/gatk-utils-${project.version}-tests.jar</additionalClasspathElement>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-engine/target/gatk-engine-${project.version}-tests.jar</additionalClasspathElement>
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<additionalClasspathElement>${gatk.basedir}/public/gatk-queue/target/gatk-queue-${project.version}-tests.jar</additionalClasspathElement>
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</additionalClasspathElements>
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</configuration>
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<executions>
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<execution>
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<id>integration-tests</id>
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<goals>
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<goal>verify</goal>
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</goals>
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<!-- run integration tests -->
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<configuration>
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<skip>${gatk.packageintegrationtests.skipped}</skip>
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</configuration>
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</execution>
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<execution>
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<id>queue-tests</id>
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<goals>
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<goal>verify</goal>
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</goals>
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<!-- run queue dry run tests -->
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<configuration>
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<skip>${gatk.packagequeuetests.skipped}</skip>
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</configuration>
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</execution>
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<execution>
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<id>large-scale-tests</id>
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<goals>
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<goal>verify</goal>
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</goals>
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<!-- run large scale tests -->
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<configuration>
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<skip>${gatk.packagelargescaletests.skipped}</skip>
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</configuration>
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</execution>
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<execution>
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<id>knowledge-base-tests</id>
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<goals>
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<goal>verify</goal>
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</goals>
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<!-- run knowledge base tests -->
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<configuration>
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<skip>${gatk.packageknowledgebasetests.skipped}</skip>
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</configuration>
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</execution>
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</executions>
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</plugin>
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</plugins>
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</build>
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</profile>
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</profiles>
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</project>
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