Ryan Poplin f65206e758 Two changes to HC GGA mode to make it more like the UG. ... -- Only try to genotype PASSing records in the alleles file -- Don't attempt to genotype multiple records with the same start location. Instead take the first record and throw a warning message.		2013-04-01 10:20:23 -04:00
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java	Two changes to HC GGA mode to make it more like the UG.	2013-04-01 10:20:23 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00