gatk3的最后一个经典版本3.8

Ryan Poplin f65206e758 Two changes to HC GGA mode to make it more like the UG. ... -- Only try to genotype PASSing records in the alleles file -- Don't attempt to genotype multiple records with the same start location. Instead take the first record and throw a warning message.		2013-04-01 10:20:23 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Two changes to HC GGA mode to make it more like the UG.	2013-04-01 10:20:23 -04:00
public	Merge pull request #135 from broadinstitute/mc_pgtag_fix	2013-03-31 11:36:40 -07:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00