depristo f64f3e2d90 Phase II support for generic reference order data set parsing. ... Can read GFF and dbSNP files correctly. Traversal engine now supports keeping moving window of reference ordered data along with the locus iterator. Tested by walking through a sam file keeping track of the dbSNP positions encountered -- they definitely look right... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@13 348d0f76-0448-11de-a6fe-93d51630548a		2009-02-28 20:47:48 +00:00
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atk	Phase II support for generic reference order data set parsing.	2009-02-28 20:47:48 +00:00
utils	Phase II support for generic reference order data set parsing.	2009-02-28 20:47:48 +00:00
ValidateSAM.java	Basic reorganization of tree	2009-02-28 15:28:56 +00:00