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gatk-3.8/protected/java/src/org/broadinstitute/sting/gatk/walkers
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David Roazen f63f27aa13 org.broadinstitute.variant refactor, part 2 
-removed sting dependencies from test classes
-removed org.apache.log4j dependency
-misc cleanup
 		2013-01-28 09:03:46 -05:00
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annotator org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
bqsr org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
compression/reducereads org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
diagnostics/targets Tool to calculate per base coverage distribution 2013-01-27 23:38:46 -05:00
genotyper org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
haplotypecaller org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
indels org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
variantrecalibration Moving lots of walkers back from protected to public (along with several of the VA annotations). 2013-01-24 11:42:49 -05:00
variantutils org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00