gatk3的最后一个经典版本3.8

Mauricio Carneiro f603d4c48c Fixing PairHMMIndelErrorModel boundary issue ... When checking the limits of a read to clip, it wasn't considering reads that may already been clipped before.		2012-07-06 11:48:04 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java	Moving ReduceReads into protected	2012-06-25 17:01:33 -04:00
public	Fixing PairHMMIndelErrorModel boundary issue	2012-07-06 11:48:04 -04:00
settings	Rev tribble to 110. Log is:	2012-06-26 15:28:32 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Navel -> GXDB	2012-06-28 13:38:00 -04:00