Mark DePristo b69d210255 Bugfix: allow gzip VCF output in multi-threaded GATK output ... -- VariantContextWriterStorage was gzipping the intermediate files that would be merged in, but the mergeInto function couldn't read those outputs, and we'd throw a very strange error. Now tmp. VCFs aren't compressed, even if the final VCF is. Added integrationtest to ensure this behavior works going forward. -- [delivers #47399279]		2013-06-17 12:39:18 -04:00
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net/sf/samtools	Delete unused FastaSequenceIndexBuilder class and accompanying test	2013-05-01 01:02:01 -04:00
org/broadinstitute/sting	Bugfix: allow gzip VCF output in multi-threaded GATK output	2013-06-17 12:39:18 -04:00