Mark DePristo 7fb620dce7 Generalize and fixup ContigComparator ... -- Now uses a SAMSequenceDictionary to do the comparison of contigs (which is the right way to do it) -- Added unit tests		2013-02-09 09:52:13 -05:00
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genotyper	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
pairhmm	Moving the random number generator over to using GenomeAnalysisEngine.getRandomGenerator in the logless versus exact pair hmm unit test. We don't believe this will fix the problem with the non-deterministic test failures but it will give us more information the next time it fails.	2013-02-05 12:56:20 -05:00
recalibration	Swap java Random generator for GATK one to ensure test determinism	2013-02-04 10:57:34 -05:00
ContigComparatorUnitTest.java	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00