Eric Banks f5e10e9879 Merged bug fix from Stable into Unstable		2012-01-05 15:35:09 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Merged bug fix from Stable into Unstable	2012-01-05 15:35:09 -05:00
test	Enabled banded indel computation by default. Reversed logic in input UG argument so that we can still disable it if required. Minor changes to integration tests due to minor differences in GL's and in annotations	2012-01-04 15:28:26 -05:00