gatk3的最后一个经典版本3.8

depristo f5b00c20d0 Updated python files ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1182 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-07 14:15:39 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated python files	2009-07-07 14:15:39 +00:00
java	other fixes for some broken unit tests	2009-07-07 05:53:13 +00:00
packages	Oops. Specified incorrect classname in packgae for depth of coverage walker.	2009-07-02 21:40:40 +00:00
perl	checking in new folder for perl scripts AND a simple script that takes an input text file and reference dictionary (.fai) and performs stable sort of the input lines according to the contig order specified by the dictionary. Position of the contig filed to sort on in the input lines is specified as --k POS option. Input lines may specify contigs that are not in the dictionary, in this case the additional contigs will be added at the end of the sorted output, after all known contigs. The sorting order between these additional contigs is simply the order in which they first appear in the input	2009-05-27 16:34:55 +00:00
python	Updated python files	2009-07-07 14:15:39 +00:00
settings	Updates to picard public / private and sam.	2009-06-30 14:50:55 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
build.xml	Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.	2009-06-18 21:29:30 +00:00
ivy.xml	Add bcel and cleanup.	2009-06-17 19:28:04 +00:00