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gatk-3.8/java/test/org/broadinstitute/sting/gatk/refdata
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aaron f4cfb0f990 The first step in integrating Jim's tree based index scheme: 
- changed to a better method for getting headers from Codecs
- some removal of old commented out code in the GATKAgrumentCollection
- changes for the rename of FeatureReader to FeatureSource
- removed the old Beagle ROD
- cleaned up some of the code in SampleUtils

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3826 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-07-19 04:49:27 +00:00
..
features/vcf4 The first step in integrating Jim's tree based index scheme: 2010-07-19 04:49:27 +00:00
tracks VCF headers now can be set to a particular VCF version after creation, which converts the header lines to the appropriate encoding on output. Plus some clean-up of the code. 2010-07-01 05:32:14 +00:00
utils fixes for parallel processing problems with Tribble, a small bug in the resource pool, and some more documentation. 2010-05-12 06:13:26 +00:00
PlinkRodUnitTest.java A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests. 2010-04-08 06:14:15 +00:00
ReadMetaDataTrackerUnitTest.java A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests. 2010-04-08 06:14:15 +00:00
ReferenceOrderedDataUnitTest.java A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests. 2010-04-08 06:14:15 +00:00
TabularRODUnitTest.java IndexedFastaSequenceFile is now in Picard; transitioning to that implementation. 2010-07-01 04:40:31 +00:00
VariantContextAdaptorsUnitTest.java The first step in integrating Jim's tree based index scheme: 2010-07-19 04:49:27 +00:00