hanna f4b6afb42c JVM issue id 5092131 (http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=5092131) ... was causing OOM issues with the new mmapping fasta file reader during large jobs. Temporarily reverting the reader until a workaround can be found. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1801 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-09 04:45:46 +00:00
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gatk	VCF can now be emitted from SSG. The basic's are there (the genotype, read depth, our error estimate), but more fields need to be added for each record as nessasary.	2009-10-08 19:50:04 +00:00
playground/gatk/walkers	changes to add VCF to the rod system, fix VCF output in VariantsToVCF, and some other minor changes	2009-09-24 15:16:11 +00:00
utils	JVM issue id 5092131 (http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=5092131)	2009-10-09 04:45:46 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	delete the integration test temp files when the test is over	2009-09-25 16:34:08 +00:00