Mark DePristo 73f9d1f217 GATK read group requirement iron hand ... -- The GATK will now throw a user exception if it opens a SAM/BAM file that doesn't have at least one RG defined -- LIBS again throws an error if the complete list of samples isn't provided -- Updating ExmpleCountLociPipeline test to use the well-formated versions of the exampleBAM and exampleFASTA files in testdata, instead of the old broken ones in validation_data. -- Convenience constructors for UserExceptions.MalformedBAM		2011-10-06 08:40:35 -07:00
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extensions/gatk	Intermediate commit cleaning up scatter intervals	2011-09-09 12:56:45 -04:00
pipeline	GATK read group requirement iron hand	2011-10-06 08:40:35 -07:00
util	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00