Mauricio Carneiro c9d8b22092 Added BWASW support to the pipeline ... Data Processing Pipeline can now use BWASW for realigning the reads. Useful for Ion Torrent data.		2011-10-20 18:36:28 -04:00
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examples	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Added BWASW support to the pipeline	2011-10-20 18:36:28 -04:00
GATKResourcesBundle.scala	Updating to use new rod system syntax plus name change for CountRODs	2011-09-19 13:30:32 -04:00
MethodsDevelopmentCallingPipeline.scala	Adding the "gold standard NA12878" target	2011-10-20 16:19:13 -04:00
PacbioProcessingPipeline.scala	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00