Roger Zurawicki f48d4cfa79 Bug fix: fully clipping GATKSAMRecords and flushing ops ... Reads that are emptied after clipping become new GATKSAMRecords. When applying ClippingOps, the ops are cleared after the clipping		2011-11-18 00:24:39 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fix: fully clipping GATKSAMRecords and flushing ops	2011-11-18 00:24:39 -05:00
test	During flanking interval creation merging overlapping flanks so that on scatter the list doesn't accidentally genotype the same site twice.	2011-11-17 13:56:42 -05:00