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Roger Zurawicki f48d4cfa79 Bug fix: fully clipping GATKSAMRecords and flushing ops
Reads that are emptied after clipping become new GATKSAMRecords.
When applying ClippingOps, the ops are cleared after the clipping
2011-11-18 00:24:39 -05:00
public Bug fix: fully clipping GATKSAMRecords and flushing ops 2011-11-18 00:24:39 -05:00
settings Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3 2011-11-17 14:46:12 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path. 2011-10-27 14:17:07 -04:00
ivy.xml Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3 2011-11-17 14:46:12 -05:00