14 lines
480 B
Python
Executable File
14 lines
480 B
Python
Executable File
#!/usr/bin/env python
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import sys
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import os
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bam_file = sys.argv[1]
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project = sys.argv[2]
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directory = bam_file.rsplit("/",1)[0]+"/"
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sample_id = bam_file.rsplit("/",1)[1].rsplit(".",1)[0]
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is_metrics = directory+sample_id+".insert_size_metrics"
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his_metrics = directory+sample_id+".hybrid_selection_metrics"
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ali_metrics = directory+sample_id+".alignment_summary_metrics"
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os.system("zip -j "+project+"_"+sample_id+"_sequencing_metrics"+" "+is_metrics+" "+his_metrics+" "+ali_metrics)
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