gatk3的最后一个经典版本3.8

Ryan Poplin f40d0a0a28 Updating VQSR to work with the MNP and symbolic variants that are coming out of the HaplotypeCaller. Integration tests change because of the MNPs in dbSNP.		2012-08-03 10:44:36 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Fix for error in HaplotypeCaller. HC has a UG argument collection for the UG engine but some of those arguments aren't appropriate to set.	2012-08-02 11:41:06 -04:00
public	Updating VQSR to work with the MNP and symbolic variants that are coming out of the HaplotypeCaller. Integration tests change because of the MNPs in dbSNP.	2012-08-03 10:44:36 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	Added the ability to update the Forum	2012-07-23 17:17:33 -04:00