David Roazen f3f01da1af Enforce serial dependencies in RecalibrationWalkersIntegrationTest ... Some tests in this class were intermittently not being executed due to being randomly scheduled before tests whose results they depend on. Now the serial dependencies are enforced to avoid problematic orderings.		2012-01-03 10:42:41 -05:00
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alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
gatk	Enforce serial dependencies in RecalibrationWalkersIntegrationTest	2012-01-03 10:42:41 -05:00
jna	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
utils	Forgot to test for inter-chromosomal mates in the adaptor clipping	2011-12-30 00:19:53 -05:00
BaseTest.java	Removing cruft that snuck in last commit.	2011-12-16 23:00:16 -05:00
MD5DB.java	Merged bug fix from Stable into Unstable	2011-10-13 18:02:06 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	All MD5 mismatches for test are shown	2011-10-04 15:53:52 -07:00