ebanks f3ca2cc9de Add safety net to BAQ calculation: explicitly cast to byte/int and check for bad values ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4954 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-06 18:09:12 +00:00
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alignment	Bug fixes for the bwa aligner and changes to support compiling against newer releases of the bwa code base.	2010-12-17 14:49:15 +00:00
analyzecovariates	Updating doc text	2010-11-24 21:34:14 +00:00
commandline	Fixed recently introduced multiplexer issue where DoC couldn't be written	2010-12-14 19:35:15 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	Better error message as per Mark	2011-01-06 15:44:02 +00:00
jna	Removed LibBat.SUB2_BSUB_BLOCK since the use of it exits the JVM.	2010-12-14 19:57:20 +00:00
oneoffprojects	Updates that slipped from my last commit: fixed some imports and calls to super().	2011-01-06 15:34:40 +00:00
playground	Intermediate commit for VariantEval 3.0. Among the changes:	2011-01-06 15:20:24 +00:00
queue	Updated the Queue GATK generator and packaging to include more dependencies for fullCallingPipeline.q.	2010-11-30 15:29:40 +00:00
utils	Add safety net to BAQ calculation: explicitly cast to byte/int and check for bad values	2011-01-06 18:09:12 +00:00