gatk3的最后一个经典版本3.8

David Roazen f3c94a3c87 Update expected test output for Java 7 ... -Changes in Java 7 related to comparators / sorting produce a large number of innocuous differences in our test output. Updating expectations now that we've moved to using Java 7 internally. -Also incorporate Eric's fix to the GATKSAMRecordUnitTest to prevent intermittent failures.		2013-05-01 16:18:01 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
public	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
settings	Rev picard, sam-jdk, tribble, and variant jars to version 1.90.1442	2013-04-25 14:05:24 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Include cofoja jar in classpath when testing release jars	2013-04-30 22:16:58 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00