Mark DePristo b08d63a6b8 Documentation and code cleanup for ClipReads, CallableLoci, and VariantsToTable ... -- Swapped -o [summary] and -ob [bam] for more standard -o [bam] and -os [summary] arguments. -- @Advanced arguments		2011-08-19 15:06:37 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Documentation and code cleanup for ClipReads, CallableLoci, and VariantsToTable	2011-08-19 15:06:37 -04:00