Mark DePristo 7d09c0064b Bug fixes and code cleanup throughout ... -- chromosomeCounts now takes builder as well, cleaning up a lot of code throughout the codebase.		2011-11-19 18:40:15 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Bug fixes and code cleanup throughout	2011-11-19 18:40:15 -05:00