gatk-3.8/scala/qscript
chartl f36861eeee One more little bfix -- the issue was not the grep command, but instead the NFS in the awk; i changed it to ++count in the last commit which was really responsible for the fix. Then this ultra-escaping semi-broke teh grep again.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4831 348d0f76-0448-11de-a6fe-93d51630548a
2010-12-13 20:36:14 +00:00
..
chartl One more little bfix -- the issue was not the grep command, but instead the NFS in the awk; i changed it to ++count in the last commit which was really responsible for the fix. Then this ultra-escaping semi-broke teh grep again. 2010-12-13 20:36:14 +00:00
depristo Q script to run VQSR on a whole variety of common data sets. To be used as a basis for general methods development pipeline 2010-12-13 16:55:52 +00:00
examples - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
hanna Trying out Queue for the first time. 2010-11-18 18:29:12 +00:00
kshakir Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects: 2010-12-10 04:36:06 +00:00
rpoplin At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
fullCallingPipeline.q Removing old arguments. We'll now be running with the defaults. 2010-12-09 18:58:56 +00:00
recalibrate.scala - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00