hanna 76efa757f0 Switched over to reviewed version of Picard patch. In process, did some optimization to the IntervalSharder ... which improved startup time 5-10x when dynamically merging many BAMs. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3331 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-08 14:12:22 +00:00
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edu.mit.broad	Switched over to reviewed version of Picard patch. In process, did some optimization to the IntervalSharder	2010-05-08 14:12:22 +00:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Switched over to reviewed version of Picard patch. In process, did some optimization to the IntervalSharder	2010-05-08 14:12:22 +00:00
org.broad	example windowed ROD walker for Kristian, and updates to Tribble	2010-05-07 17:12:50 +00:00
org.reflections	updating the reflections library; Matt found a problem where the reflections library doesn't sort out non-java objects from the classpath (affects only OS X so far). I'll push back the changes to	2010-05-06 02:08:41 +00:00