gatk-3.8/scala/src/org/broadinstitute/sting/queue/function
kshakir d5ac822e97 When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes.
Custom gatherer prints out the class name in the logs.
Try to retrieve mail domain from /etc/mailname before falling back to the hostname.
Building oneoff jars during ant oneoffs.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5540 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-30 21:43:37 +00:00
..
scattergather When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00
CommandLineFunction.scala Copying jobLimitSeconds to clones. 2011-01-30 06:35:53 +00:00
FileExtension.scala At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
InProcessFunction.scala When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00
JavaCommandLineFunction.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
ListWriterFunction.scala Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high. 2011-01-28 23:33:58 +00:00
QFunction.scala When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00