gatk3的最后一个经典版本3.8

kiran f314ef8d84 Features and exclusion criteria are now instantiated in VariantFiltrationWalker's initialize() method, rather than in every map() call. This means the features and exclusion criteria will only ever be initialized once. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1281 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-20 22:47:21 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Cleanup my pathetic prose.	2009-07-15 21:35:13 +00:00
java	Features and exclusion criteria are now instantiated in VariantFiltrationWalker's initialize() method, rather than in every map() call. This means the features and exclusion criteria will only ever be initialized once.	2009-07-20 22:47:21 +00:00
packages	Packaging cleanup.	2009-07-14 21:00:02 +00:00
perl	sortByRef now supports x:y location syntax	2009-07-07 16:42:40 +00:00
python	Actually listens to justPrint now	2009-07-15 16:52:46 +00:00
settings	Updates to picard public / private and sam.	2009-06-30 14:50:55 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	Derive examples from real data.	2009-07-10 04:21:37 +00:00
build.xml	Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.	2009-06-18 21:29:30 +00:00
ivy.xml	Add bcel and cleanup.	2009-06-17 19:28:04 +00:00