Mark DePristo af9746af52 Fix merge failure		2012-12-24 13:43:04 -05:00
..
alignment	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
commandline	I have pulled out all of the documentation URLs and put them into the HelpUtils class as static variables; this way, Appistry can change links as needed to point commercial users to their own internal forum without having to muck things up all over our source. Added some TODOs for Geraldine to update links in the GATK docs that still point to the old wiki. Sorry that I am pushing into stable, but that's what Appistry is pulling from for their release next week (and unstable has been failing forever).	2012-11-27 10:26:17 -05:00
gatk	Fix merge failure	2012-12-24 13:43:04 -05:00
jna	Bug fix for Queue LSF v8.3	2012-12-19 22:28:53 -05:00
queue	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
utils	Minor cleanup and expansion of the RecalDatum unit tests	2012-12-24 13:35:58 -05:00