Mark DePristo f2b0575dee Detect unreasonably large allele strings (>2^16) and throw an error ... -- samtools can emit alleles where the ref is 42M Ns and this caused the GATK (via tribble) to hang in several places. -- Tribble was updated so we actually could read the line properly (rev. to 51 here). -- Still the parsing algorithms in the GATK aren't happy with such a long allele. Instead of optimizing the code around an improper use case I put in a limit of 2^16 bp for any allele, and throw a meaningful exception when encountered.		2012-01-17 16:40:26 -05:00
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helpTemplates	Build.xml -- contracts not built by default. Slightly simpler CSS for dl.	2011-08-19 15:07:26 -04:00
repository	Detect unreasonably large allele strings (>2^16) and throw an error	2012-01-17 16:40:26 -05:00
ivysettings.properties	Moved build.xml, ivy.xml and settings to root of Sting repository.	2009-03-18 19:13:19 +00:00
ivysettings.xml	Point ivy to the maven repo instead of the default ibiblio repo. Drastically	2011-08-31 17:27:25 -04:00