Mark DePristo f2b0575dee Detect unreasonably large allele strings (>2^16) and throw an error ... -- samtools can emit alleles where the ref is 42M Ns and this caused the GATK (via tribble) to hang in several places. -- Tribble was updated so we actually could read the line properly (rev. to 51 here). -- Still the parsing algorithms in the GATK aren't happy with such a long allele. Instead of optimizing the code around an improper use case I put in a limit of 2^16 bp for any allele, and throw a meaningful exception when encountered.		2012-01-17 16:40:26 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Detect unreasonably large allele strings (>2^16) and throw an error	2012-01-17 16:40:26 -05:00
test	Better location for the downsampling of reads in PrintReads	2012-01-14 14:06:09 -05:00