gatk-3.8

History

kshakir 8855f080c2 For the fullCallingPipeline.q: - Reading the refseq table from the YAML if not specified on the command line. - Removed obsolete -bigMemQueue now that CombineVariants runs in 4g. - Added a -mountDir /broad/software option to work around adpr automount issues. - Merged the LSF preexec used for automount into the shell script used to execute tasks. - Using the LSF C Library to determine when jobs are complete instead of postexec. - Updated queue.sh to match the changes above. - Updated the FCPTest to match the changes above. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5036 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-20 22:34:43 +00:00
..
clibrary	For the fullCallingPipeline.q:	2011-01-20 22:34:43 +00:00
lsf/v7_0_6	For the fullCallingPipeline.q:	2011-01-20 22:34:43 +00:00

kshakir 8855f080c2 For the fullCallingPipeline.q:

- Reading the refseq table from the YAML if not specified on the command line.
 - Removed obsolete -bigMemQueue now that CombineVariants runs in 4g.
 - Added a -mountDir /broad/software option to work around adpr automount issues.
 - Merged the LSF preexec used for automount into the shell script used to execute tasks.
 - Using the LSF C Library to determine when jobs are complete instead of postexec.
 - Updated queue.sh to match the changes above.
 - Updated the FCPTest to match the changes above.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5036 348d0f76-0448-11de-a6fe-93d51630548a

2011-01-20 22:34:43 +00:00

clibrary

For the fullCallingPipeline.q:

2011-01-20 22:34:43 +00:00

lsf/v7_0_6

For the fullCallingPipeline.q:

2011-01-20 22:34:43 +00:00