kshakir f1f9bd6dcc Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit. ... TODO: Switch to bulk status checks and add status archive lookups. Sending SIGTERM(15) instead of SIGKILL(9) to allow for graceful termination of child process. Printing out the name of the QScripts in the compile error text. Added a pipelineretry -PR pass through for the MFCP and MFCPTest. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5295 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-23 18:59:08 +00:00
..
core	Few organizational changes, queue output is now categorized and hidden. Also changed NA12878.Wex to dbsnp 129.	2011-02-22 22:49:38 +00:00
examples	Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high.	2011-01-28 23:33:58 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	now only accepts intervals files if the user specifically requests to report bams at interval only.	2011-02-23 16:49:58 +00:00
playground	Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit.	2011-02-23 18:59:08 +00:00