delangel f1d708f4d4 Fixes for HRun annotation in case of indels: ... a) In case of a deletion value was completely broken, we'd report 0 or -1. b) For indels, we report maximum of forward and backward values - I've seen empirically many sites which are not strand biased but which seem to be artifacts and the homopolymer run is always to the right only (because we left align by convention). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5260 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-17 18:57:21 +00:00
..
net/sf	A few more unit tests plus some extra	2011-02-09 01:51:34 +00:00
org/broadinstitute/sting	Fixes for HRun annotation in case of indels:	2011-02-17 18:57:21 +00:00