gatk3的最后一个经典版本3.8

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Guillermo del Angel f176c854c6 Swapping in logless Pair HMM for default usage with UG: -- Changed default HMM model. -- Removed check. -- Changed md5's: PL's in the high 100s change by a point or two due to new implementation. -- Resulting performance improvement is about 30 to 50% less runtime when using -glm INDEL.		2013-06-18 10:06:27 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Swapping in logless Pair HMM for default usage with UG:	2013-06-18 10:06:27 -04:00
public	Feature requested by Reich lab and Paavo lab in Leipzig for ancient DNA processing:	2013-06-17 13:21:09 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Create README.md	2013-06-17 16:03:45 -03:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

gsa-unstable