gatk3的最后一个经典版本3.8

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Eric Banks f172c349f6 Adding the functionality to enable users to input a file of VCFs for -V. To do this I have added a RodBindingCollection which can represent either a VCF or a file of VCFs. Note that e.g. SelectVariants allows a list of RodBindingCollections so that one can intermix VCFs and VCF lists. For VariantContext tags with a list, by default the tags for the -V argument are applied unless overridden by the individual line. In other words, any given line can have either one token (the file path) or two tokens (the new tags and the file path). For example: foo.vcf VCF,name=bar bar.vcf Note that a VCF list file name must end with '.list'. Added this functionality to CombineVariants, CombineReferenceCalculationVariants, and VariantRecalibrator.		2014-01-08 00:45:00 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Adding the functionality to enable users to input a file of VCFs for -V.	2014-01-08 00:45:00 -05:00
public	Adding the functionality to enable users to input a file of VCFs for -V.	2014-01-08 00:45:00 -05:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Separate tests that access the knowledge base from other tests	2013-12-06 11:31:35 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/